Health Data Research UK's repositories
CPRD_UTI_sepsis_elderly
This is the R code and code lists used to analyse the data for paper "Antibiotic prescribing for lower UTI in elderly patients in primary care and risk of bloodstream infection: A cohort study using electronic health records in England"
los_review
Code used to produce the results presented in "A rapid review of evidence for hospital length of stay of COVID-19 patients"
4C-Initiative
4C-Initiative
BRASS
Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements.
cgpBattenberg
Battenberg algorithm and associated implementation script
collaborathon-2020-team3
HDR UK Collaborathon Team3 Submission
comix_covid-19-first_wave
Code and data from the analysis of the 1st wave of the CoMix 2020 contacts survey
covid-mobility-tracker
Generate maps from google mobility data
covid-uk
Scenario analyses for COVID-19 outbreak in the United Kingdom
drug_target_lof
Evaluating potential drug targets through human loss-of-function genetic variation
Electronic-Monitoring-Device-Adherence-Typology
Study Aim: To construct a data-driven multi-dimensional typology of medication non-adherence in children with asthma.
ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
ESCs_models
Agent-based modelling of pattern formation in embryonic stem cells
glossary
HDR UK Glossary and Acronyms
hilton-keeling-estimating-R0
The code in this repository accompanies our upcoming paper "Estimation of country-level basic reproductive ratios for novelCoronavirus (COVID-19) using synthetic contact matrices". A preprint version of this paper is available at https://www.medrxiv.org/content/10.1101/2020.02.26.20028167v1. Some of our notation has changed between the preprint and the submission version of the paper. In particular, the age-specific susceptibility is now denoted by sigma rather than z.
ldsc
LD Score Regression (LDSC)
manuscript_code
Manuscript code for our paper: bit.ly/bloodcellgwas
phenotypes
HDR UK National Phenotype Library
resource_manager
This is a simple resource manager
ScienceCOPEMethodsCode
Code accompanying map generation in Drew et al. Science manuscript
treeseq-inference
Work for the tree sequence inference paper.
vascular-ageing
Container for Python analysis codes regarding "Prediction of vascular ageing based on smartphoneacquired PPG signals"