CogStack / MedCATtrainer

A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.

CogStack/MedCATtrainer Issues

Error: [E050] when trying to load sample annotate entity project
Updated 6 months ago2
Expand to include Relation Annotation models
Updated 9 months ago5
Incompatible with ARM architecture
Updated 9 months ago
Default docker-compose issue
Closed 9 months ago1
Error: invalid load key, '<'.
Updated 10 months ago
What is the difference between the cdb.dat files provided by the UMLS Small/Full models versus creating own cdb.dat from UMLS DB
Updated a year ago1
Option to disable loading the examples
Closed a year ago2
Pressing enter/return in concept lookup for last span submits document
Closed a year ago4
Active learning sampling strategy
Updated a year ago2
Import concepts from concept DB does nothing
Updated a year ago4
Enable multiple users to work in the same instance of MedCATtrainer
Closed a year ago2
Search for synonyms in Concept Picker/Lookup
Closed a year ago5
Text between angle brackets not (correctly) displayed
Closed a year ago1
Trailing space in blue text span in Submit document
Closed a year ago1
Bug with data upload exception
Closed a year ago1
Installation Results in Traceback and Hangs
Updated 2 years ago2
Use MedCATTrainer as annotation tool (without pre-annotations)
Closed 2 years ago3
No check mark after importing concepts
Closed 2 years ago3
New term occurs multiple times in document
Updated 2 years ago1
Simplify how environment variables and config files are used
Updated 2 years ago
Preferred name from incorrect CDB file
Updated 2 years ago5
Not working in Safari
Closed 2 years ago1
Correct Way to Configure SSL for MedCatTrainer
Updated 2 years ago
Concept lookup not working. Concepts not being imported into SOLR.
Closed 2 years ago4
Spell checking functionality
Updated 2 years ago2
Download problem
Closed 2 years ago2
Concept Lookup error in search_solr in MCT 2.2.7
Closed 2 years ago2
Demo - Config validation error
Closed 2 years ago5
Uploading Dataset produces error: Error with previous action: '>' not supported between instances of 'int' and 'str'
Closed 2 years ago1
Unable to add annotation.
Updated 2 years ago2
Problems with concept picker
Closed 2 years ago7
Import concepts does not support more overlap in CUI between cdbs
Closed 2 years ago2
Unclear error message when "Use for training" is unchecked
Closed 2 years ago12
No example annotation project or dataset upon installation.
Closed 2 years ago1
Internal Server Error
Closed 2 years ago12
Feature enhancement: allow concept import and metatask creation from API
Closed 2 years ago3
Import Concepts Can't Impute a Preferred Name
Closed 2 years ago1
Resubmit all button does not work in the new version
Closed 3 years ago1
Reuploading a dataset appends documents instead of replaces
Closed 3 years ago2
SuspiciousFileOperation error when using create-dataset endpoint
Closed 3 years ago4
Include document name in "Download without text"
Closed 3 years ago3
Standardise the name for type ids
Closed 3 years ago2
Error while adding project annotate entities
Closed 3 years ago2
Demo not working
Closed 3 years ago3
Most fields in Concept Summary are n/a
Closed 3 years ago3
Expand to include models for meta annotations
Updated 3 years ago
Internal server error
Closed 3 years ago1
need for serving from '/'
Closed 3 years ago4
Deleted files in admin panel are not deleted from disk
Closed 3 years ago4
Frontend warning: "Invalid URL: ${this.$route.path}, redirected to the MedCAT Home page." appears with Deployments behind a reverse-proxy
Closed 3 years ago1