CogStack's repositories
CogStack-SemEHR
Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
MedCATtrainer
A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
CogStack-Pipeline
Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning
CogStack-NiFi
Building data processing pipelines for documents processing with NLP using Apache NiFi and related services
MedCATtutorials
General tutorials for the setup and use of MedCAT.
MedCATservice
Running MedCAT as a RESTful web service
tika-service
Apache Tika running as a web service
nlp2phenome
using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)
working_with_cogstack
Basic setup and easy to follow templates to interact and search CogStack for data analysts
cogstack-getting-started
Documentation for Deploying and Configuring CogStack
CogStack-Trial
Trial Recruitment made easy by using CogStack and SemEHR
risk-score-builder
Map clinical risk score concepts to structured definitions using ontologies, calculate structured risk scores from NLP.
CogStack-PatientTimeline
A patient timeline browser build on-top of CogStack
annotations-ingester
Send text annotations back to ElasticSearch
cogstack-jupyter-hub
Custom Jupyter Hub Docker image with example notebooks
CogStackCohort
A MedCAT annotations retrieval tool for cohort identification
gate-nlp-service
Running GATE NLP applications as RESTful web services
texscrubber
Personal information de-identification tool
AnonCATDemo
The Deidentify app uses MedCAT to automatically redact or replace sensitive information in documents. Customisable rules and batch processing make it easy to handle large datasets.
CogStack-Recipes
Example deployment recipes based on CogStack
CogStack-ModelServe
A model serving and governance system for CogStack NLP solutions
glowing-bear-cogstack-demo
GlowingBear CogStack Demo