Arnaud Belcour's repositories
asp-syntax-highlight
Visual Studio Code syntax highlighting for Answer Set Programming
gff_to_gbk
Convert GFF, fastas, annotation table and species name into Genbank.
circos-singularity
Singularity recipe for Circos.
Workflow_GeneList_Analysis
Analysis of genes list. Not working!
bioservices
Access to Biological Web Services from Python.
bubble-tools
python routines related to bubble format
carveme_singularity
SIngularity image definition to install Cplex and Carveme in a container (e.g. for using the software on a cluster)
clyngor
Handy python wrapper around Potassco's Clingo ASP solver.
deepec-singularity
Singularity recipe for DeepEC.
docker-clingo
Dockerfile for Clingo with Python3.5 and Lua5.3.
gapseq
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
goSTAG-for-more-species
Python and R scripts to use goSTAG on exotic species.
kegg2bipartitegraph
Reconstruct metabolic graphs using KEGG database.
MeneTools
MeneTools are Python3 tools to explore the topology of metabolic networks. It includes Menecheck, Menescope, Menepath and Menecof.
metage2metabo-metacom_singularity
Singularity recipe for Metage2Metabo metacom.
Noun-Verb_Relations
Noun/Verb couple extraction (project for Text Mining and Analytics course).
pbsea
Deprecated, use Pingouin instead.
phylogeny-singularity
Singularity recipe for some phylogeny tools.
Python_Modules_Installation
A module to install automatically a python module.
rhea_mapper
[Not maintained and not updated] Draft metabolic network reconstruction using Rhea database, Uniprot and SPARQL queries.
singularity_ubcg
Singularity recipe for UBCG Bacterial Core Genes
test_method
Repository containing test for some methods.