ArnaudBelcour / ecmapper

Test to map EC number to BIGG and ModelSEED reactions.

ecmapper

Just a test to see if it is possible to map EC number from an organism to BIGG and ModelSEED reactions.

Requirements

It requires biopython and cobrapy.

Installation

In the ecmapper git folder:

python3 setup.py develop

Use

This tool takes as input a genbank file (containing the EC number). It also uses database files from BIGG and ModelSEED.

To download the database into a folder use the command:

ecmapper database -d database_folder

To use ecmapper:

ecmapper map -g genbank_file -d database_folder -o output_folder