This singularity recipe contains:
- BEAGLE library v3.2.0 (PRE-RELEASE)
- BEAST v1.10.4
- FastME 2.1.6.1
- FastTree 2.1
- IQ-TREE version 2.0-rc1 (November 21, 2019)
- MrBayes 3.2.7
- PhyML v3.3.20190909
- RAxML-NG v0.9.0
Using the Singularity recipe, you can create a Singularity container:
sudo singularity build phylogeny.sif Singularity
These tools can be called using:
singularity exec phylogeny.sif tool_exec
The tool_exec to use:
- beast
- fastme
- FastTree, FastTreeDbl and FastTreeMP for FastTree
- iqtree
- mb for MrBayes
- phyml and phyml-mpi for PhyML
- raxml-ng