Anne Carpenter's repositories
awesome-cytodata
A curated list of awesome cytodata resources
CellProfiler
An open-source application for measuring phenotypes
CellProfiler-Analyst
Software for exploring and analyzing large, high-dimensional image-derived data.
2023_Moshkov_NatComm
Predicting assays Using Morphological Analysis
application
A web application for classifying objects
cellpainting-gallery
Cell Painting Gallery
cellprofiler.github.io
http://www.cellprofiler.org
CellProfiler1.0
CellProfiler 1.0 (Matlab-based)
centrosome
An open source image processing library
deep-review
A collaboratively written review paper on deep learning, genomics, and precision medicine
imaging-flow-cytometry
maging flow cytometry combines the high-throughput capabilities of conventional flow cytometry with single-cell imaging. CellProfiler can be used to analyze the resulting images from imaging flow cytometry, whether brightfield, darkfield, or fluorescence.
knime-bridge
ZMQ connection between CellProfiler and Knime
open-data-registry
A registry of publicly available datasets on AWS
prokaryote
CellProfiler’s Java dependencies
python-bioformats
Read and write life sciences file formats
python-javabridge
Python wrapper for the Java Native Interface