CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.
Installation
Compiled releases for Linux, OS X, and Windows are available from cellprofiler.org/releases.
Install from the Python Package Index (PyPI)
$ pip install --pre cellprofilerInstall from Source
Prerequisites
NumPy is the fundamental package for scientific computing with Python:
$ pip install numpyInstallation
$ pip install --editable .