Computational tools for the Human Cell Atlas
A list of collaborative computational projects supported by CZI!
Here is a sample template you can copy and paste to add your project:
TITLE |
DESCRIPTION |
PEOPLE & AFFILIATIONS |
[name](link to repo) |
description of the project |
Jeremy Freeman, PhD @ CZI Science |
[another project name](link to repo) |
description of the project |
Joe Hand and Danielle Robinson, PhD @ CS&S |
Projects
Bioconductor
TITLE |
DESCRIPTION |
PEOPLE & AFFILIATIONS |
Cell Type
TITLE |
DESCRIPTION |
PEOPLE & AFFILIATIONS |
Cell State
TITLE |
DESCRIPTION |
PEOPLE & AFFILIATIONS |
Compression
TITLE |
DESCRIPTION |
PEOPLE & AFFILIATIONS |
Imaging
TITLE |
DESCRIPTION |
PEOPLE & AFFILIATIONS |
Latent Spaces
TITLE |
DESCRIPTION |
PEOPLE & AFFILIATIONS |
Tybalt |
Variational Autoencoder for Gene Expression (Paper) |
Greg Way, Qiwen Hu, and Casey Greene @Greenelab @Penn |
PHATE |
Visualizing high-dimensional data (Paper) |
Kevin Moon, David van Dijk, and Smita Krishnaswamy @KrishnaswamyLab @Yale |
CoGAPS |
Bayesian Non-Negative Matrix Factorization |
Elana Fertig, Genevieve Stein-O'Brien, and Tom Sherman @FertigLab |
Manifold Alignment
TITLE |
DESCRIPTION |
PEOPLE & AFFILIATIONS |
Multiomics
TITLE |
DESCRIPTION |
PEOPLE & AFFILIATIONS |
Population Variation
TITLE |
DESCRIPTION |
PEOPLE & AFFILIATIONS |
Portals
TITLE |
DESCRIPTION |
PEOPLE & AFFILIATIONS |
Scale
TITLE |
DESCRIPTION |
PEOPLE & AFFILIATIONS |
Trajectories
TITLE |
DESCRIPTION |
PEOPLE & AFFILIATIONS |