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Al3n70rn

Al3n70rn

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Al3n70rn

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antigen.garnish

Ensemble neoepitope prediction from DNA variants in R.

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athena

Computational Framework to Analyse Spatial Heterogeneity in Visum, IMC or MIBI data sets

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bios201

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Clinker

Gene Fusion Visualiser

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cocoanlab.github.io

Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

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delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

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epicseg

Chromatin segmentation in R

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GeneFuse

Gene fusion detection and visualization

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guacamole

Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly

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iAnnotateSV

iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Generation DNA sequencing data.

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kourami

Kourami: Graph-guided assembly for HLA alleles

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liger

Lightweight Iterative Gene set Enrichment in R

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lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery

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manta

Structural variant and indel caller for mapped sequencing data

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MoNuSAC-ISBI-2020

[TMI'2021][ISBI MoNuSAC'2020] 11th place solution to Multi-organ nuclei segmentation and classification challenge.

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MOSClip

Multi Omics Survival Clip

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MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

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pathml

Tools for computational pathology

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PathomicFusion

Fusing Histology and Genomics via Deep Learning - IEEE TMI

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squid

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StructuralVariantAnnotation

R package designed to simplify structural variant analysis

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SUPPA

SUPPA: Fast quantification of differential splicing

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SUPPA_supplementary_data

Supplementary data

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survminer

Survival Analysis and Visualization

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svaba

Structural variation and indel detection by local assembly

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TensorFlow-Advanced-Segmentation-Models

A Python Library for High-Level Semantic Segmentation Models based on TensorFlow and Keras with pretrained backbones.

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TFCE_mediation

Fast regression and mediation analysis of vertex or voxel MRI data with TFCE

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waffle

:maple_leaf: Make waffle (square pie) charts in R

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wes-filters

Filters for false-positive mutation calls in whole-exome sequencing

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