Al3n70rn's repositories
3dbarplot
A 3D barplot script for R. Can encode variables using both height and depth of columns.
annotables
Provides tables for annotating Ensembl Gene IDs.
annotatr
Annotation of Genomic Regions to Genomic Annotations
ascatNgs
Somatic copy number analysis using paired end sequencing
chorddiag
R interface to D3 chord diagrams
clonevol
Inferring and visualizing clonal evolution in multi-sample cancer sequencing
cnv-caller
A cnv, snv and clonality caller.
devMeth450k
Supplementary Code for "Mapping DNA methylation across development, genotype, and schizophrenia in the human frontal cortex"
genesets
Gene Sets as R Environments
ggnet
Network visualization with ggplot2
graph-tool
An efficient python module for analysis and manipulation of graphs.
HotMAPS
Detects hotspot regions for somatic mutations in 3D protein structures
Introduction_to_Statistics_and_Data_Analysis_Yonsei
Introduction to Applied Data Analysis for Social Science
ipython-tutorial-VA2015
IPython tutorial given as part of Visual Analytics winter term 2015/2016 at Johannes Kepler University
jvarkit
Java utilities for Bioinformatics
mg14
mg14's favourite R functions
networkD3
D3 JavaScript Network Graphs from R
ngsplot
Quick mining and visualization of NGS data by integrating genomic databases
nozzle
Nozzle is a report generation toolkit for data analysis pipelines implemented in R.
PaperRMDTemplate
Here is a template to use for basic academic reports
PhyC
Clustering cancer evolutionary trees
pVAC-Seq
A cancer immunotherapy pipeline
QuantumClone
Clonal reconstruction from HTS data
Rep-Res-Book
Source code files for the book Reproducible Research with R/RStudio
repseq-tutorial
Rep-Seq data analysis tutorial
sccanTutorial
introduction to sccan statistical studies
SCHISM
Subclonal Hierarchy Inference from Somatic Mutations
sj2psi
Convert RNA-STAR aligner "SJ.out.tab" files to "Percent spliced-in" (Psi) scores
vast-tools
A toolset for profiling alternative splicing events in RNA-Seq data.