Al3n70rn's repositories
annotables
Provides tables for annotating Ensembl Gene IDs.
ascatNgs
Somatic copy number analysis using paired end sequencing
chorddiag
R interface to D3 chord diagrams
clonevol
Inferring and visualizing clonal evolution in multi-sample cancer sequencing
cnv-caller
A cnv, snv and clonality caller.
devMeth450k
Supplementary Code for "Mapping DNA methylation across development, genotype, and schizophrenia in the human frontal cortex"
genesets
Gene Sets as R Environments
graph-tool
An efficient python module for analysis and manipulation of graphs.
HotMAPS
Detects hotspot regions for somatic mutations in 3D protein structures
Introduction_to_Statistics_and_Data_Analysis_Yonsei
Introduction to Applied Data Analysis for Social Science
ipython-tutorial-VA2015
IPython tutorial given as part of Visual Analytics winter term 2015/2016 at Johannes Kepler University
jvarkit
Java utilities for Bioinformatics
mg14
mg14's favourite R functions
networkD3
D3 JavaScript Network Graphs from R
nozzle
Nozzle is a report generation toolkit for data analysis pipelines implemented in R.
PaperRMDTemplate
Here is a template to use for basic academic reports
PhyC
Clustering cancer evolutionary trees
pVAC-Seq
A cancer immunotherapy pipeline
QuantumClone
Clonal reconstruction from HTS data
Rep-Res-Book
Source code files for the book Reproducible Research with R/RStudio
repseq-tutorial
Rep-Seq data analysis tutorial
sccanTutorial
introduction to sccan statistical studies
SCHISM
Subclonal Hierarchy Inference from Somatic Mutations
sj2psi
Convert RNA-STAR aligner "SJ.out.tab" files to "Percent spliced-in" (Psi) scores
vast-tools
A toolset for profiling alternative splicing events in RNA-Seq data.