Giters
38
/
d4-format
The D4 Quantitative Data Format
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Stargazers:
150
Watchers:
10
Issues:
65
Forks:
20
38/d4-format Issues
Efficiently summing coverage tracks from multiple d4 files
Updated
16 days ago
Bug in build_htslib.sh?
Closed
19 days ago
Comments count
2
New stat function: % of positions in intervals with coverage >X
Updated
21 days ago
Comments count
6
Occasionally large differences in coverage for same gene region in same sample
Closed
a month ago
Comments count
10
Can't install latest pyd4 release
Closed
a month ago
Comments count
1
Wrong mean coverage values from indexed d4 file
Updated
a month ago
Bug: off-by-one bug on bam reads
Updated
4 months ago
Comments count
1
Cut a new release please
Updated
a year ago
Comments count
5
[ENH] convert BED to d4 file.
Updated
a year ago
misaligned pointer dereference in `read_next_value`
Updated
a year ago
Does not compile on M1 mac
Closed
a year ago
Comments count
4
[ENH] Is there utility for single-cell genomics?
Closed
2 years ago
Comments count
18
Bug: OSError: memory map must have a non-zero length in load_to_np_impl
Updated
a year ago
Comments count
1
Missing columns when merging multicolumn files depending on order
Closed
a year ago
Comments count
4
d4tools stats - Show statistics across multiple regions
Updated
2 years ago
d4tools view - Flag `--region-file` not working.
Updated
2 years ago
Bug in view? different values when including the first position in a chromosome
Closed
2 years ago
Comments count
4
Part size limit causing odd results every 10M bases?
Updated
2 years ago
no apparent size reduction of multi-track files as function of no of samples
Updated
2 years ago
Comments count
1
Allow view to accept a BED file of regions as input
Closed
2 years ago
Comments count
3
Enable `create` to take input from stdin
Updated
2 years ago
Comments count
1
[enhancement] stat for a region/list of regions
Closed
2 years ago
Comments count
5
create fails on some cram/bams
Closed
2 years ago
Comments count
13
Mapping quality filter not functioning
Closed
2 years ago
Comments count
2
exclude bam flag rather than include ?
Closed
2 years ago
Comments count
3
Add some basic stat options: count / sum
Closed
2 years ago
Comments count
1
d4toh5.py used for manuscript?
Closed
2 years ago
Comments count
3
Multitrack D4 from python API without writing multiple intermediate d4 files
Closed
2 years ago
Comments count
2
Bug in encoding data with pyd4 when using sparse
Closed
2 years ago
Comments count
2
`d4::task::Histogram::with_bin_range()` returning distribution that is missing `0`s
Closed
2 years ago
Comments count
9
`d4tools create` builds empty d4 file for small input files
Closed
2 years ago
Comments count
6
pip install fails
Closed
2 years ago
Comments count
2
change tracking
Closed
2 years ago
Comments count
7
Maintainance of plotters
Closed
2 years ago
pyd4 manylinux wheel
Updated
2 years ago
Build fails on CentOS7 : asks for -fPIC option
Closed
2 years ago
Comments count
7
Dockerfile no longer works with edition = "2021"
Updated
2 years ago
[ENH] Multiple file/track support
Closed
2 years ago
Comments count
1
Typo in page title - Quantatative
Closed
2 years ago
Auto-detect sparse (k=0) format.
Closed
3 years ago
README.md refers to nonexistent d4tools crate
Closed
3 years ago
Comments count
3
Version numbers for util subcommands are 0.1.0
Closed
3 years ago
[ENH] Add HTTP range support
Closed
3 years ago
D4 file format magic number
Closed
3 years ago
Comments count
2
Which d4utils version to use?
Updated
3 years ago
Comments count
3
d4tools is not on cargo, version numbers/releases?
Closed
3 years ago
Comments count
1
Expired SSL certificate causes d4-hts installation to fail
Closed
3 years ago
Comments count
3
cargo build. => feature `edition2021` is required
Closed
3 years ago
Comments count
1
Dockerfile
Closed
3 years ago
Odd results from stat command
Closed
3 years ago
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