d4tools stats - Show statistics across multiple regions
pontushojer opened this issue · comments
Pontus Höjer commented
Hi,
I want to look at the mean expression over a number of regions defined in a BED file. Currently using d4tools stat
with --region
output the mean for each separate regions. It would be nice to also get an additional line with the mean expression across all regions defined in the BED file. Something like:
chr1 10000 11014 98.38560157790927
chr1 11031 11058 0
chr1 11079 11453 33.86631016042781
chr1 15792 15854 10053.435483870968
chr1 16707 16749 1592.952380952381
chr1 19300 19448 2727.9189189189187
chr1 20823 20868 4395.555555555556
chr1 26448 26470 31438
chr1 29739 29797 5912.258620689655
total 103.0920139090
This does however make the output a bit inconsistent. One other option would be to add a separate flag that only outputs the total, something like ---across-regions
. What do you think?