Allow view to accept a BED file of regions as input

Question

Allow view to accept a BED file of regions as input

arq5x opened this issue 3 years ago · comments

Currently, the view command will accept a list of regions in chr:start-end... format on the CL. It would be a nice addition to allow a BED file to be specified view -r as well.

Anthony Ferrari · Answer 1 · Mon Jan 31 2022 21:55:14 GMT+0800 (China Standard Time)

Hi,
Just a comment to know if this feature is still on the radar ? It would be indeed really nice to be able to do various custom computations supplying a bed file to view.
Thanks,
Anthony

Aaron Quinlan · Answer 2 · Mon Jan 31 2022 22:34:46 GMT+0800 (China Standard Time)

Hi Anthony, absolutely. @38 is working on a new release that includes this functionality.

Aaron Quinlan · Answer 3 · Thu Sep 01 2022 22:39:28 GMT+0800 (China Standard Time)

Hi @af8 - this functionality is present in the current release.