yanlifeng

ConvStencil

VClinic

A portable and efficient infrastracture for value profilers. Doc: https://vclinic.readthedocs.io/en/latest/index.html

probminhash

ProbMinHash – A Class of Locality-Sensitive Hash Algorithms for the (Probability) Jaccard Similarity

dashing2

Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.

AGAThA

PPoPP24 AGAThA: Fast and Efficient GPU Acceleration of Guided Sequence Alignment for Long Read Mapping

sourmash_plugin_branchwater

fast, multithreaded sourmash operations: search, compare, and gather.

free-programming-books

:books: Freely available programming books

RabbitBAM

Ultra-fast I/O framework for BAM files

how-to-optim-algorithm-in-cuda

how to optimize some algorithm in cuda.

RabbitSketch

fast sketch for DNA or normal sequence data (MinHash WeightedMinHash OrderMinHash and hyperloglog)

EasyPlayerPro-Win

EasyPlayerPro是一款免费的全功能流媒体播放器，支持RTSP、RTMP、HTTP、HLS、UDP、RTP、File等多种流媒体协议播放、支持本地文件播放，支持本地抓拍、本地录像、播放旋转、多屏播放、倍数播放等多种功能特性，核心基于ffmpeg，稳定、高效、可靠、可控，支持Windows、Android、iOS三个平台，目前在多家教育、安防、行业型公司，都得到的应用，广受好评！

SWQC

An Efficient Sequencing Data Quality Control Tool on Sunway Platform

GPTL

General Purpose Timing Library

assembly-stats

Get assembly statistics from FASTA and FASTQ files

TRF

Tandem Repeats Finder: a program to analyze DNA sequences

toulligQC

A post sequencing QC tool for Oxford Nanopore sequencers

nanocomp

Comparison of multiple long read datasets

emhash

Fast and memory efficient c++ flat hash map/set

rasusa

Randomly subsample sequencing reads or alignments

spoa

SIMD partial order alignment tool/library

roms

Regional Ocean Modeling System (ROMS)

RabbitSAlign

GPU Acceleration of Short Read Alignment for Heterogeneous Multicore Platforms

netcdf-fortran

Official GitHub repository for netCDF-Fortran libraries, which depend on the netCDF C library. Install the netCDF C library first.

RabbitV

RabbitV: fast detection of viruses and microorganisms in sequencing data on multi-core architectures

RabbitTClust_MPI

gemm

Fast vectorized gemm to take full usage of YMM Registers by SIMD instructions.

cuteSV

Long read based human genomic structural variation detection with cuteSV

delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

mpiMarkDup

mpiSORT