xjtu-omics's repositories
msisensor-pro
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
ChineseQuartetGenome
Genome assembly and variant benchmarks for Chinese Quartet
msisensor-rna
MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data
cluster
instruction of Ye-Lab HPC
BSLtool
Build satellite library
IAGS_AUTO
The project is based on IAGS and automates processes
processDrimm
The input file generator for [IAGS](https://github.com/xjtu-omics/IAGS)
pindel
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
HiCAT-human
HiCAT-human
Four_Papaver_HiFi
The analysis scripts used in four Papaver HiFi data analysis projects
Papaver-Genomics
The genomic data for Papaver species
2023-YuXu-Chromatin-accessibility-landscape-of-Papaver-somniferum_bak
2023, graduated student, YuXu's work
2023-YuXu-poppy_subgenome
2023, graduated student, YuXu's work about poppy subgenome
D2
D2: Compute DNA Density and Distance to nuclear periphery.
ArabidopsisAssem
Arabidopsis thaliana high-quality genome assembly
HRD
change to TAI
GS_Image
GastricImages Recognition
msisensor
microsatellite instability detection using tumor only or paired tumor-normal data