xjtu-omics / HRD

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HRD

change to TAI

HRD

change to TAI

Requirements

·software：R

·Operating system:Linux, OS X,Windows

·R version: 3.5.O and above

latest version of Sequenza R package must be installed from Bitbucket https://bitbucket.org/sequenza_tools/sequenza or the sequenza package can be installed by:

·setRepositories(graphics = FALSE, ind = 1:6)

·install.packages("sequenza")

The R packages required are as folllows:

 data.table
 usethis
 devtools

Getting started

·library(usethis)

·library(devtools)

·library(data.table)

·library(sequenza)

·scar_score((file,reference = "grch38", seqz=TRUE)