bluenote-1577 / skani

Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.

bluenote-1577/skani Issues

(Feature Request) Host the GTDB r214.1 skani database
Closed 4 months ago6
thread 'main' panicked at src/parse.rs:111:46: -l specified file could not be opened properly. Make sure this file exists. Exiting.: Os { code: 2, kind: NotFound, message: "No such file or directory" }
Closed 4 months ago2
help info for use as a library
Updated 4 months ago6
question on FracMinHash comparison with Minimzer+MinHash
Updated 5 months ago
Question: How does skani handle ambiguous ("N") bases?
Closed 5 months ago3
skani outputting low number of comparisons
Closed 6 months ago2
Question on Markers.bin file.
Closed 7 months ago1
[Question] Other uses of k-mer sketches created by skani?
Closed 7 months ago5
[Feature request] Many-to-many ANI comparisons
Closed 7 months ago6
Rescue_small question and potential bug
Updated 8 months ago2
Implementation of Thomas Wang's integer hash function
Closed 9 months ago4
skani as library restricted to 1 thread
Closed 9 months ago2
Incorrect version number reported
Closed 9 months ago1
How to make a Heatmap with skani matrix output
Closed 9 months ago4
ANI values not symmetric?
Closed a year ago5
skani versus bindash
Closed a year ago5
Identical sequences have pairwise AF lower than 100%
Closed a year ago4
Aligned fraction reported by triangle mode
Closed a year ago4
Skani accuracy blow 85% ANI
Closed a year ago1
ARM64 support for skani by default
Closed a year ago2
Questions on AAI verus skaai?
Closed a year ago6
skani for eukaryotic genomes
Closed a year ago7
support for arm64 neon
Closed a year ago6