wfgui

marktext

📝A simple and elegant markdown editor, available for Linux, macOS and Windows.

seurat

R toolkit for single cell genomics

PythonDataScience-Collections

最全数据分析资料汇总（含python、爬虫、数据库、大数据、tableau、统计学等）

gatk

Official code repository for GATK versions 4 and up

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

officer

:cop: officer: office documents from R

scRNA-seq

taxonkit

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

cellphonedb

CoverM

Read coverage calculator for metagenomics

SingleR

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)

EasyAmplicon

Easy Amplicon data analysis pipeline

rmats-turbo

CAMISIM

CAMISIM: Simulating metagenomes and microbial communities

mOTUs

motus - a tool for marker gene-based OTU (mOTU) profiling

metacoder

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

minced

Mining CRISPRs in Environmental Datasets

CRISPRCasTyper

CCTyper: Automatic detection and subtyping of CRISPR-Cas operons

siamcat

R package for Statistical Inference of Associations between Microbial Communities And host phenoType

phamb

Downstream processing of VAMB binning for Viral Elucidation

DBSCAN-SWA

shortbred

ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then search for these markers in metagenomic data and determine the presence and abundance of the protein families of interest.

fishtaco

FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of microbiome functional shifts

MIMOSA

Model-based Integration of Metabolite Observations and Species Abundances

Demovir

Taxonomic classification of viruses at Order and Family level

HostG

Graph convolutional neural network for host prediction

PHACTS

A simple program to classify the lifestyle of phages.

STAR-Fusion-Tutorial

Tutorial for STAR-Fusion, FusionInspector, and de novo reconstruction of fusion transcripts using Trinity

CRISPRdigger

NGS-analysis

二代测序数据分析