Daniel McDonald's repositories
apd-core
Core repo for
ariadne
Ariadne, a de Bruijn graph-based program for barcoded read deconvolution
bioconda-recipes
Conda recipes for the bioconda channel.
biom-format
The Biological Observation Matrix (BIOM) Format Project
biom-format-feedstock
A conda-smithy repository for biom-format.
duckdb-web
DuckDB website and documentation
GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
markdown-cv
a simple template to write your CV in a readable markdown file and use CSS to publish/print it.
microsetta-interface
The Microsetta participant facing user interface
microsetta-private-api
A private microservice to support The Microsetta Initiative
q2-feature-table
Official QIIME 2 plugin supporting normalization of sample by feature tables.
scikit-bio
Core objects, functions and statistics for working with biological data in Python.
scikit-bio-feedstock
A conda-smithy repository for scikit-bio.
scikit-bio-tutorials
Interactive tutorials for using scikit-bio in biological research
unifrac-colab-notebooks
Notebooks for use on Google Colabs