See https://qiime2.org's repositories
qiime-deploy
Tool to easily install QIIME's dependencies on Linux systems
Topiary-Explorer
Interactive phylogenetic tree viewing software
qiime_web_app
QIIME, EMP and American Gut Web Application
qiime-galaxy
Repository for QIIME/Galaxy integration code.
qiime-deploy-conf
configuration files to be used with the qiime-deploy packages
QIIME-Scaling
The goal of this project is to produce an estimator for runtime and memory consumption: (runtime, memory) = f(script_name, number_of_observations, number_of_samples, sparsity). This estimator will be based off of empirical results from standard test data sets (to be created, described below) and validated with real world datasets. Once in place, we can then use this estimator to a) improve resource utilization on both growler and compy b) determine what scripts to target for optimization.