Waldron Lab at the CUNY SPH's repositories
MultiAssayExperiment
Bioconductor package for management of multi-assay data
HGNChelper
Identify and correct invalid gene symbols
cBioPortalData
Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
curatedMetagenomicDataCuration
Sample Metadata Curation for curatedMetagenomicData
AppStatBio
Applied Statistics for High-Throughput Biology
SingleCellMultiModal
Single Cell multimodal data scripts for downloading datasets
GSEABenchmarkeR
Reproducible GSEA Benchmarking
curatedOvarianData
The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer
presentations
A repository for public presentations
bugSigSimple
Simple exploratory analysis of curated microbe signatures
OmicsMLRepoData
Translate Bioconductor resources into AI/ML-ready format + Manual curation/harmonization of the metadata for improved usability
bugphyzzAnalyses
Analyses with data and signatures imported from the bugphyzz package.
BugSigDBExports
BugSigDB data files
BugSigDBStats
BugSigDB Stats and Analysis
MicrobiomeBenchmarkData
Data for benchmarking in microbiome research.
terraTCGAdata
TCGA data access on Terra
MicrobiomeBenchmarkDataAnalyses
Analyses using the datasets provided by the MicrobiomeBenchmarkData package.
taxPProValidation
Code for validation analyses for prediction of annotations in bugphyzz