waldronlab / bugsigdbr

R-side access to published microbial signatures from BugSigDB

https://bioconductor.org/packages/bugsigdbr

waldronlab/bugsigdbr Issues

Default if importBugSigDB does no import the latest Zenodo stable version
Closed 7 months ago3
Release 3.18
Closed 7 months ago52
[BUG] getSignatures can produce signatures < min.size
Closed 9 months ago1
`importBugSigDB` function returns error
Closed 10 months ago3
Error if more than 1 devel cache
Updated 10 months ago
GitHub Action Error
Closed a year ago2
Can't download uberon
Closed a year ago4
subsetByOntology: include query term itself
Closed a year ago6
documentation enhancement of using devel
Closed a year ago1
[BUG] Study 722 is missing k__bacteria from MetaPhlAn taxon names
Closed a year ago1
Can't create signatures
Closed a year ago7
version should accept full SHA
Closed a year ago1
3.16 Release?
Closed a year ago1
Unexpected output format when creating signatures for study 727
Closed a year ago1
importBugSigDB(version = 'devel', cache = FALSE) not reading Study 727
Closed a year ago16
import PMID column as numeric
Closed a year ago3
Warning in importBugSigDB() when updating a previously cached version (windows-only)
Closed 2 years ago3
standard enrichment workflow
Updated 2 years ago2
Update Github actions
Closed 2 years ago4
BugSigDB 1.1.0 release (for Bioconductor 3.15)
Closed 2 years ago3
all(grepl("^[A-Z][a-z ]+$", names(s))) is not TRUE
Closed 3 years ago2
importBugSigDB mixing Experiments?
Closed 3 years ago4
importBugSigDB(version="devel") is missing studies
Closed 3 years ago2
Issues in recent build report
Closed 3 years ago1
Pull from stable/zenodo
Closed 3 years ago12
Using cache might report using a cached copy from future date?
Updated 3 years ago1
ontology-based queries for experimental factors and body sites
Closed 3 years ago1
Pulling from github causes BiocCheck error
Closed 3 years ago3
Address recommendations from Bioconductor
Closed 3 years ago3
[BUG] GHA fails on mac and windows container due to BiocVersion issue
Closed 3 years ago1
Scrape export links from export page
Closed 3 years ago1
endomorphic version of of getSignatures `tax.level` argument
Closed 3 years ago6
Bioc submission
Closed 3 years ago8
add writeGMT function to R package
Closed 3 years ago1
Create shell R package + pkgdown gh-pages site
Closed 3 years ago
Add importBugSigDB to R package
Closed 4 years ago7