Vince Carey's repositories
BiocOncoTK
Bioconductor components for general cancer genomics
AnnotationForge
Tools for building SQLite-based annotation data packages
AnVILECCtasks
Tasks for AnVIL ECC to help evaluate progress in AnVIL development
bioc318
project description for bioc318
BiocNIHIntra
Bioconductor examples for NIH Intramural demonstrations of AnVIL
BiocOffPiste
Code that aids experts who wish to use incompatible versions of R and Bioconductor
BiocReporting
Public repo for Bioconductor project reporting 2022
biocws-retic-test
testing
CDNMdatasci
Reflections on data science for Channing Division of Network Medicine
CDNMp2c
Project definitions for pathway to cloud for CDNM
cellassign
Automated, probabilistic assignment of cell types in scRNA-seq data
chkcog
chkcog
citeseqApp
shiny app to explore specific forms of processed CITE-seq data
csamaDist
distance, nn-graphs, clustering for CSAMA 2022
iSEE
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
itcrinfo
Simple overview of ITCR project descriptions
izmirTrip
pics from izmir
labinternal
demonstrate internal web page design using github.io/jekyll etc.
MIND_DUA_DATA
tools for MIND DUA data archive
pareg
Pathway enrichment computations using a regularized regression approach to incorporate inter-pathway relations in the statistical model.
SCecosys
Discuss data/software ecosystem for single cell genomics
simba_pbg
A customized PyTorch-BigGraph (PBG) package for "simba", modified from https://github.com/facebookresearch/PyTorch-BigGraph
teachCovidData
R package for getting familiar with COVID-19 data resources and their use
test1
test
vjcitn.github.io
lab web pages