Vince Carey's repositories
BiocBuildTools
R code for managing and analyzing components of Bioconductor software ecosystem
BiocAlphaMissense
Elementary interfaces to AlphaMissense resources, using BiocFileCache, Rsamtools, GenomicRanges
littleDeep
A little deep learning taken from Intro to Stat Learning with R by James et al.
bbsBuildArtifacts
Analyze a slice of Bioc Build System artifacts
BiocAlphaMis
Elementary interfaces to AlphaMissense resources, using BiocFileCache, Rsamtools, GenomicRanges
BiocFrame
flexible data frame
BiocHPRClk
A look at the pangenome consortium resources in AnVIL
BiocInPerson
Notes for in person meetings
BiocPyInterop
Material for Bioconductor 2023 workshop on interoperation with python
BiocSfaira
simple interface from R to Sfaira
BiocSIMBA
basilisk interface to pinellolab SIMBA
CancerDataSci100
BiocBook
CancerDataSci101
BiocBook
litbas
small basilisk test for locally managed python package
mastApp
resources for elementary image analysis app
ohcathin
Thin approach to OHCA on AnVIL
ontology-mapper
Tool for mapping (uncontrolled) terms to ontology terms
ontoProc2
Revise ontoProc methods to take advantage of INCAtools SemanticSQL representations of ontologies
parody
outlier dytection
rdec
Regression with damped exponential correlation
RNhanes
Achieving Transparency and Reproducibility in NHANES Research using R
sfaira
data and model repository for single-cell data
simba
SIMBA: SIngle-cell eMBedding Along with features
Simba4Bioc
Elementary Bioconductor interfaces to Pinello Lab SIMBA graph embeddings for single cell omics
spacexr
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
SpatialData
vince checking it out
YEScoder
YEScoder is a repository for Young Empowered Scientists at Dana-Farber Cancer Institute
zellkonverter
Conversion between scRNA-seq objects