Vince Carey (vjcitn)

vjcitn

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Location:Boston

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Vince Carey's repositories

scviR

experimental interface between R and scvi-tools

BiocBuildTools

R code for managing and analyzing components of Bioconductor software ecosystem

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YESCDS

Cancer Data Science resources for DFCI YES for CURE

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AnVILBestPractices

Bioconductor practices recommended for working with NHGRI AnVIL

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basilisk

Clone of the Bioconductor repository for the basilisk package.

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basilisk.utils

Clone of the Bioconductor repository for the basilisk.utils package.

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Bioc4AnVIL

Umbrella package for AnVIL workspaces related to Bioconductor

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BiocAssets

Overview of container and binary production processes

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BiocBigGraph

interface to facebook research PyTorch-BigGraph, inspired by pinellolab SIMBA

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BiocMIMB

Methods in Molec Biol/Cancer Bioinfo article

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BiocSklearn

track bioc package

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BiocTBG

TorchBigGraph applications

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CDNMscrna

materials for single-cell RNA-seq workshop at Channing

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ensemblVEP

R Interface to Ensembl Variant Effect Predictor

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ggmanh

exploring some additional exports

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gwasCatSearch

tooling for semantic search of NHGRI GWAS catalog

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littlebas

a little bit of basilisk with owlready2

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lkre

test

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phecopack

Support for computing with Phecodes

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Rdisop

This is the git repository matching the Bioconductor package Rdisop: Decomposition of Isotopic Patterns

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scRNAseq

Clone of the Bioconductor repository for the scRNAseq package.

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spacexr

Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

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usewebr

tests of webr

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vjcwebr

testing webr for teaching

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YESCDS2

Updating YESCDS with webr

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