Vince Carey's repositories
BiocBuildTools
R code for managing and analyzing components of Bioconductor software ecosystem
AnVILBestPractices
Bioconductor practices recommended for working with NHGRI AnVIL
basilisk
Clone of the Bioconductor repository for the basilisk package.
Bioc4AnVIL
Umbrella package for AnVIL workspaces related to Bioconductor
BiocAssets
Overview of container and binary production processes
BiocBigGraph
interface to facebook research PyTorch-BigGraph, inspired by pinellolab SIMBA
BiocMIMB
Methods in Molec Biol/Cancer Bioinfo article
BiocSklearn
track bioc package
biocSuppAPI
interrogate the API of support.bioconductor.org
BiocTBG
TorchBigGraph applications
CDNMscrna
materials for single-cell RNA-seq workshop at Channing
ensemblVEP
R Interface to Ensembl Variant Effect Predictor
ggmanh
exploring some additional exports
gwasCatSearch
tooling for semantic search of NHGRI GWAS catalog
littlebas
a little bit of basilisk with owlready2
lkre
test
osca4anvil
simple support for OSCA in AnVIL for Bioc 3.14
phecopack
Support for computing with Phecodes
Rdisop
This is the git repository matching the Bioconductor package Rdisop: Decomposition of Isotopic Patterns
scRNAseq
Clone of the Bioconductor repository for the scRNAseq package.
spacexr
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
vjc-build-binaries
walkthrough
vjcwebr
testing webr for teaching
YESCDS2
Updating YESCDS with webr