iGEM/UCSD evolutionary biology and bioinformatics group

hyphy-tutorials

HyPhy tutorials

flea-pipeline

A pipeline for long-read sequencing data.

hy454

evogenomics_hyphy

flea-server

A simple server for the FLEA web app.

flea-web-app

A client-side web app for visualizing FLEA pipeline analysis results.

HIV-NGS

HIV NGS Processing pipeline

hyphy-absrel

Scripts, processing modules and test data for the aBSREL method

kpnet-global

Network analyses of the North California HIV cohort in the context of global sequence data

qfilt

Simple and FAST barcode splitter for 454 FASTA files.

analyses

Various molecular evolutionary analyses implemented in HyPhy batch language.

bcell-phylo

Take antibody sequence data from JSON to FASTA format

bioconda-recipes

Conda recipes for the bioconda channel.

busted

Scripts, processing modules and test data for BUSTED

cartas

hiv-ngs-galaxy-playbook

homebrew-veg

hppy

An intuitive HyPhy interface for Python

mmvc

Multinomial mixture variant caller

pubs

Scripts and data for group publications

relax

silverback-web

sklmrmr

TestForPositiveSelection

translate-gard

Converts HyPhy 2.3 GARD output to JSON

underscore

JavaScript's utility _ belt

veg-hiv-env

A web app to display and interact with within-host longtitudinal HIV-1 env sequences based on JSONs generated offline