iGEM/UCSD evolutionary biology and bioinformatics group's repositories
SARS-CoV-2
Daily analyses of genomic SARS-CoV-2 data
github-action-benchmark
GitHub Action for continuous benchmarking to keep performance
IAV-H3N2-analysis
Comparative analysis of H3N2 human/avian/mammalian isolates.
galaxy-landing-page
Center pane for the VEG Galaxy server
hyphy-site
HyPhy Markdown Site
create-phylo-app
Example repository to set up a CLI phylotree app
edge-filtering
Edge Filtering with HIV-TRACE
galaxy-config
configuration files and instructions for galaxy.hyphy.org
hivtrace-subcluster
Reports nuanced relationships within clusters that may inform its rate of growth and general attention-worthiness within a larger network
homebrew-bio
:beer::microscope: Bioinformatics formulae for the Homebrew and Linuxbrew package managers
horsecov
Analysis of NGS horse coronavirus data
londonMSM_tree_simulator
Coalescent simulation of London MSM trees
omicron-selection
Scripts for SARS-CoV-2 omicron selection analyses
react-phylotree
A reusable React component to build phylogenetic tree visualizations and interactive widgets
SARS-CoV-3
Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures
superseal
SUPERread Seeding, Extension, Absorption, and Localization based viral quasispecies reconstruction
tools-iuc
Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission