tshauck

brrrr

Tools to process biological sequences and annotations to modern file formats.

gcgc

An ML-feature processing library for biological sequences.

gh-action-event-to-aws-eventbridge

Posts GitHub Actions Events to AWS EventBridge

msn-kit

A library (in Rust) and CLI (mm) for working with Mass Spectrometry data.

arrow-datafusion

Apache Arrow DataFusion SQL Query Engine

biopython

Official git repository for Biopython (originally converted from CVS)

BioSerDe

Bioinformatics format (De)Serialization

cblaster

Find clustered hits from a BLAST search

duckdb

DuckDB is an in-process SQL OLAP Database Management System

duckdb-deltatable-extension

A purely experimental DuckDB Deltalake extension

duckdb-extension-framework

duckdb-rs

Ergonomic bindings to duckdb for Rust

extension-template

Template for DuckDB extensions to help you develop, test and deploy a custom extension

FLIP

A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design

flyte

Kubernetes-native workflow automation platform for complex, mission-critical data and ML processes at scale. It has been battle-tested at Lyft, Spotify, Freenome, and others and is truly open-source.

homebrew-brrrr

homebrew tap for brrrr

lance

An open-source tool for blazing fast exploration and analysis of visual data using SQL and Python, currently supports DuckDB

langchain

⚡ Building applications with LLMs through composability ⚡

language

Shared repository for open-sourced projects from the Google AI Language team.

login-registration-backend

matchms

Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.

noodles

Bioinformatics I/O libraries in Rust

quadratic

Quadratic | Technical Spreadsheet

quick-xml

Rust high performance xml reader and writer

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

Rust-CUDA

Ecosystem of libraries and tools for writing and executing fast GPU code fully in Rust.

spring-security-registration

Go further into "Learn Spring Security":

substrait

transformers

🤗Transformers: State-of-the-art Natural Language Processing for Pytorch and TensorFlow 2.0.

WFA2-lib

WFA2-lib: Wavefront alignment algorithm library v2