tshauck

brrrr

Tools to process biological sequences and annotations to modern file formats.

gh-action-event-to-aws-eventbridge

Posts GitHub Actions Events to AWS EventBridge

msn-kit

A library (in Rust) and CLI (mm) for working with Mass Spectrometry data.

arrow-ballista

Apache Arrow Ballista Distributed Query Engine

arrow-datafusion

Apache Arrow DataFusion SQL Query Engine

arrow-datafusion-comet

Apache Arrow DataFusion Comet Spark Accelerator

arrow-datafusion-python

Apache Arrow DataFusion Python Bindings

arrow-rs

Official Rust implementation of Apache Arrow

arrow-zarr

Implementation of Zarr file format in Rust

biopython

Official git repository for Biopython (originally converted from CVS)

BioSerDe

Bioinformatics format (De)Serialization

candle

Minimalist ML framework for Rust

datafusion-wasm-bindings

WASM bindings for DataFusion

duckdb

DuckDB is an in-process SQL OLAP Database Management System

duckdb-deltatable-extension

A purely experimental DuckDB Deltalake extension

duckdb-extension-framework

duckdb-rs

Ergonomic bindings to duckdb for Rust

evidence

Business intelligence as code: build polished reports with SQL and markdown

extension-template

Template for DuckDB extensions to help you develop, test and deploy a custom extension

flyte

Kubernetes-native workflow automation platform for complex, mission-critical data and ML processes at scale. It has been battle-tested at Lyft, Spotify, Freenome, and others and is truly open-source.

iceberg-rust

Apache Iceberg

lance

An open-source tool for blazing fast exploration and analysis of visual data using SQL and Python, currently supports DuckDB

langchain

⚡ Building applications with LLMs through composability ⚡

lightmotif

A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

noodles

Bioinformatics I/O libraries in Rust

quadratic

Quadratic | Technical Spreadsheet

quarto-cli

Open-source scientific and technical publishing system built on Pandoc.

sqlparser-rs

Extensible SQL Lexer and Parser for Rust

substrait

WFA2-lib

WFA2-lib: Wavefront alignment algorithm library v2