tsalo

xDF

xDF estimates variance of Pearson's correlations among highly autocorrelated time series.

misc-notebooks

nilearn

Machine learning for NeuroImaging in Python

NiMARE

Coordinate- and Image-based meta-analysis in Python

tedana

TE-dependent analysis of multi-echo fMRI

xcp_d

Post-processing of fMRIPrep , NiBabies, HCP, and DCAN outputs

aroma

ICA-AROMA, as a Python package

aslprep

bids-specification

Brain Imaging Data Structure (BIDS) Specification

CuBIDS

Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

fmripost-aroma

Run ICA-AROMA on fMRIPrep derivatives

fmriprep

fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

github-track-clones

heudiconv

little helper to ease DICOM conversion to ready-to-share folder with heuristics

just-the-docs

A modern, high customizable, responsive Jekyll theme for documentation with built-in search.

NBCLab.github.io

Website for the NBC lab

nibabies

Processing tools for magnetic resonance images of infant brains

nipype

Workflows and interfaces for neuroimaging packages

nireports

The NiPreps' Reporting and Visualization system - report templates and "reportlets"

niworkflows

Common workflows for MRI (anatomical, functional, diffusion, etc)

PennLINC.github.io

Documentation for PennLINC

pybids

Python tools for querying and manipulating BIDS datasets.

PyMARE

PyMARE: Python Meta-Analysis & Regression Engine

qsiprep

Preprocessing and reconstruction of diffusion MRI

rapidtide

rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data

ReproBrainChart.github.io

:triangular_ruler: Website for Reproducible Brain Charts Project

sdcflows

Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

smriprep

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

warpkit

Python library for neuroimaging transforms.

xcp_d-examples

Examples of advanced use-cases for xcp_d.