transmart

There are 1 repository under transmart topic.

• thehyve / glowing-bear

  :bear: The open source cohort selection and analysis interface

  transmartuser-interfaceangular4cohort-selectionglowing-bear
  Language:TypeScript 31

• thehyve / transmart-core

  Core components and documentation of the tranSMART platform. https://i2b2transmart.org/

  transmartdata-warehouseopen-source
  Language:Groovy 14

• thehyve / transmart-batch

  tranSMART pipeline alternative to ETL, using Spring Batch

  transmarttransmart-batchspring-batch
  Language:Groovy 9

• thehyve / glowing-bear-docker

  Docker scripts for Glowing Bear

  glowing-beartransmartdocker
  Language:Shell 8

• thehyve / tmtk

  tranSMART Arborist ETL toolkit

  data-modelingdata-curationtransmartjupyter-notebook
  Language:Python 6

• thehyve / transmart-api-client-py

  🐍 Python client for tranSMART Glowing Bear

  transmartrest-apipythondata-science
  Language:Python 6

• tranSMART-Foundation / transmart-core

  Core components and documentation of the tranSMART platform.

  researchtransmarttranslationalbiomedical-informatics
  Language:JavaScript 6

• thehyve / arborist

  TranSMART Arborist: Graphical tool for reshaping your data for the tranSMART data warehouse.

  transmartdata-curationuser-interfacetransmart-batch
  Language:JavaScript 3

• thehyve / python_csr2transmart

  Scripts for converting CSR data to TranSMART

  transmarttransmart-copy
  Language:Python 3

• thehyve / python_transmart_loader

  TranSMART loader library for Python

  transmarttransmart-copypython
  Language:Python 3

• thehyve / transmart-api-training

  Data science with tranSMART REST API in Python and R

  transmartrest-apipythonrtutorialtraining
  Language:Jupyter Notebook 3

• thehyve / transmart-hyper-dicer

  Export a subset of data from a TranSMART instance based on a query, and upload them to a different (empty) TranSMART instance using transmart-copy. Short for TranSMART hypercube dicer.

  transmartcutting-edge
  Language:Python 3

• Quilljou / next-ts-tailwind-starter

  i18nlessnext-intlnextjsshadcn-uitransmarttypescript
  Language:TypeScript 2

• thehyve / data-showcase

  A data showcase for displaying a summary of data in TranSMART.

  data-showcasetransmartgrails
  Language:Groovy 2

• thehyve / gb-backend

  Backend application for Glowing Bear UI, supporting user queries management, subscription and notification functionality

  glowing-beartransmart
  Language:Groovy 2

• thehyve / pmc-conversion

  Data extraction, transformation and loading pipeline for the Princess Maxima Center

  luigitransmartcbioportal
  Language:Python 2

• thehyve / puppet-transmart_core

  Puppet module for TranSMART

  transmartpuppet
  Language:Puppet 2

• thehyve / python_claml2transmart

  ClaML ontology to TranSMART loader

  clamltransmarttransmart-copy
  Language:Python 2

• thehyve / transmart-android

  Android Client for TranSMART

  transmartandroid-client
  Language:Java 2

• ivanov-vision / tranSMART---Vagrant

  tranSMART-Vagrant Ubuntu 14.04

  transmartvagrant
  Language:Shell 1

• JannikNickel / MTT

  ETL process for transforming the MIMIC-III dataset into the required format for tranSMART-batch by using high dimensional data types to store time series data.

  transmartmimic-iii
  Language:Python 1

• thehyve / glowing-bear-site

  Github pages for Glowing Bear website

  glowing-beartransmarti2b2shrinemedco
  Language:HTML 1

• thehyve / puppet-glowing_bear

  Puppet module for Glowing Bear

  puppetglowing-beartransmart
  Language:Ruby 1

• thehyve / python_fhir2transmart

  FHIR to TranSMART loader

  transmarttransmart-copyfhir
  Language:Python 1

• thehyve / python_ontology2transmart

  Example ontology to TranSMART loader

  transmarttransmart-copy
  Language:Python 1

• thehyve / transmart-lib

  TranSMART API client library and proxy

  transmartrest-apiproxy
  Language:Java 1

• thehyve / transmart-packer

  data jobs for transmart

  transmartexport
  Language:Python 1

• thehyve / transmart-variant-store-connector

  Variant store connector for the TranSMART API

  transmart
  Language:Java 1

• JannikNickel / tranSMART-timeseries-demo

  Demonstration of a docker based tranSMART installation with time series visualization support in SmartR by loading time series data from the MIMIC-III dataset into high dimensional variables.

  transmarttimeseries
  Language:Shell 0

• Lundbeck-Biometrics / tranSMART-admin

  Repo for sharing tranSMART admin tasks, such as config info and troubleshooting scripts

  transmart
  Language:Groovy 0

• anarkia7115 / transmart_loader

  transmart
  Language:Shell

• thehyve / workshop-tuebingen2019

  Materials for the Tübingen 2019 workshop for data loading and querying with Python

  transmarttmtketlglowing-bearpython
  Language:Jupyter Notebook