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Chanjo provides a better way to analyze coverage data in clinical sequencing.
Count Mapped Exonic Non-Duplicate (MEND) reads in an RNA Seq bam file
A simple Nextflow pipeline for testing the performance of sambamba vs samtools
Align reads over a reference genome, filter aligned-reads, and mark duplicates
Snakemake workflow used to call peaks with Macs2
Report summary statistics relating to quality of bam files with Nextflow