pseudo-alignment

There are 0 repository under pseudo-alignment topic.

JensUweUlrich / Taxor
Fast and space-efficient taxonomic classification of long reads
kmer long-read long-read-sequencing metagenomics syncmer taxonomic-classification taxonomic-profiling bioinf em-algorithm pseudo-alignment xor-filter interleaved-xor-filter bioinformatics microbiome refseq taxonomy
Language:C++ 16
BimberLab / nimble
nimble — execute lightweight, flexible alignments on arbitrary reference libraries
bio python nimble aligner fast multiplatform pseudo-alignment rna-seq 10x rust
Language:Python 1
BimberLab / nimble-aligner
nimble-aligner is the backend for nimble, a tool that executes lightweight, flexible alignments to generate supplemental alignment data
alignment bio fast multiplatform nimble ohsu-vgti pseudo-alignment rna-seq rust rust-bio
Language:Rust 1