Jens-Uwe Ulrich's repositories
ReadBouncer
Fast and scalable nanopore adaptive sampling
PlasmidEnrichmentScripts
Scripts to reproduce results from in-silico plasmid enrichment study
bioconda-recipes
Conda recipes for the bioconda channel.
chopper
A tool for partitioning a set of sequences into similar batches.
curl
A command line tool and library for transferring data with URL syntax, supporting DICT, FILE, FTP, FTPS, GOPHER, GOPHERS, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, MQTT, POP3, POP3S, RTMP, RTMPS, RTSP, SCP, SFTP, SMB, SMBS, SMTP, SMTPS, TELNET and TFTP. libcurl offers a myriad of powerful features
deepnano-blitz
Very fast ONT basecaller
dl-plasmid-classifier
Master Thesis on Deep Learning-Based Plasmid Classification
ganon
a read classification tool based on Interleaved Bloom Filters
hdf5
Official HDF5® Library Repository
libzmq
ZeroMQ core engine in C++, implements ZMTP/3.1
openssl-cmake
Build OpenSSL with CMake on MacOS, Win32, Win64 and cross compile for Android, IOS
phylodeep
PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.
raptor
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
seqan
SeqAn's official repository.
seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.