population-structure-inference

There are 0 repository under population-structure-inference topic.

privefl / bigsnpr
R package for the analysis of massive SNP arrays.
big-data bioinformatics memory-mapped-file parallel-computing polygenic-scores population-structure-inference r r-package snp-data statistical-methods
Language:R 183
xinghuq / DA
DA incorporates the commonly used linear and non-linear, local and global supervised learning approaches (discriminant analysis). These discriminant analyses can be used to do ecological and evolutionary inference. We show the examples of demographic history inference, species identification, and population structure inference in the vignettes using the supervised discriminant analysis.
discriminant-analysis kernel-principle-components dapc kernel-local population-structure-inference ecological kernel principal-components
Language:R 1
Rice-PCA-SNPs
aangush / Rice-PCA-SNPs
An analysis of SNP data from many rice genome samples. Includes PCA, MDS plots, processing with fastStructure, visualizing results
faststructure genomics pca-analysis population-structure-inference bioinformatics snp-data
Language:HTML 0

privefl / bigsnpr