polygenic-scores

There are 1 repository under polygenic-scores topic.

• privefl / bigsnpr

  R package for the analysis of massive SNP arrays.

  big-databioinformaticsmemory-mapped-fileparallel-computingpolygenic-scorespopulation-structure-inferencerr-packagesnp-datastatistical-methods
  Language:R 211

• PGScatalog / pgsc_calc

  The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation

  polygenic-scorespolygenic-risk-scoresgenetic-risk-scorepgs-catalognextflowworkflowpgsprspolygenic-risk-scorepolygenic-score
  Language:Nextflow 127

• mpinese / nimpress

  Polygenic score calculation from VCF in Nim.

  vcfpolygenic-scoresgenetics
  Language:Nim 15

• intervene-EU-H2020 / synthetic_data

  Software program for generating synthetic datasets for genotypes and phenotypes

  bioinformaticsdata-generatorgenerative-modelgeneticsgenomicsjuliaphenotypesphenotypingpolygenic-risk-scorespolygenic-scoressimulationsynthetic-data
  Language:Jupyter Notebook 14
• PGSToolKit

  swvanderlaan / PGSToolKit

  A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.

  polygenicprsgrspolygenic-risk-scoresgenetic-risk-scoreldpredprsicepolygenic-scores
  Language:Shell 14

• maialab / quincunx

  quincunx: an R package to query, download and wrangle PGS Catalog data

  ebigwaspolygenic-risk-scorespolygenic-scoresrr-package
  Language:R 13

• PGScatalog / PGS_Catalog

  An open database of polygenic scores and relevant metadata needed to apply and evaluate them correctly.

  djangopgs-catalogpolygenic-scoresrest-apiwebsite
  Language:Python 10

• omerwe / MKLMM

  Multi Kernel Linear Mixed Models for Complex Phenotype Prediction

  statistical-geneticsgwaspolygenic-risk-scorespolygenic-scoresmachine-learninggaussian-processesgaussian-process-regressionkernel-methods
  Language:Python 9

• PGScatalog / pygscatalog

  Python applications and libraries for working with PGS data and the PGS Catalog

  genetic-risk-scorepgs-catalogpolygenic-risk-scorespolygenic-scores
  Language:Python 7

• ramiromagno / quincunx

  quincunx: an R package to query, download and wrangle PGS Catalog data

  gwaspolygenic-risk-scorespolygenic-scoresrr-package
  Language:R 7

• PGScatalog / pgscatalog_utils

  (superseded by pygscatalog) Utilities for working with PGS Catalog API and scoring files

  genetic-risk-scorepolygenic-risk-scorespolygenic-scorespgs-catalog
  Language:Python 5

• yaacoo / multiPGS_py

  multiPGS_py is a fast, simple and low-memory python method to calculate polygenic scores (PGS/PRS)

  bioinformaticsgenomics-datapolygenic-scorespython3risk-prediction
  Language:Python 2

• tutkuyaras / PGSXplorer

  Automatized Polygenic Score Prediction

  nextflow-dsl2pgspolygenic-scores
  Language:Nextflow 1

• fsakhtari / PRS

  Polygenic Risk Scores (PRS) pipeline.

  genomicspolygenic-risk-scorespolygenic-scores
  Language:R 0