orthology-assignments

There are 1 repository under orthology-assignments topic.

eggnogdb / eggnog-mapper
Fast genome-wide functional annotation through orthology assignment
annotations orthology-assignments functional-annotation genomics
Language:Python 539
univieCUBE / deepnog
Protein orthologous group assignment with deep learning
protein-sequences orthology-inference orthology-assignments deep-learning machine-learning
Language:Python 25
orthofisher
JLSteenwyk / orthofisher
a broadly applicable tool for automated gene identification and retrieval
bioinformatics evolution evolutionary-biology genomics orthology orthology-assignments orthology-inference phylogenetics phylogenomics python
Language:Python 24
orthosnap
JLSteenwyk / orthosnap
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
bioinformatics evolution evolutionary-biology genomics orthology orthology-assignments orthology-inference phylogenetics phylogenomics python
Language:Python 19
fethalen / phylopypruner
Tree-based orthology inference with functionality for reducing contamination
bioinformatics phylogenetics orthology-inference orthology orthology-assignments
Language:Python 3
fethalen / orthoquoll
A stand-alone tool for evaluating simple statistics of orthologs
phylogenetics phylogenetic-tree orthology-inference orthology-assignments orthology-relationships orthology
Language:Python 1