markov-state-model

There are 1 repository under markov-state-model topic.

deeptime-ml / deeptime
Python library for analysis of time series data including dimensionality reduction, clustering, and Markov model estimation
time-series-analysis markov-state-model covariance-estimation markov-model python hidden-markov-model koopman-operator coherent-set-detection
Language:Python 706
markovmodel / PyEMMA
🚂 Python API for Emma's Markov Model Algorithms 🚂
python hidden-markov-model molecular-dynamics analysis markov-state-model tica time-series hmm bayesian-methods markov-model mbar kinetic-modeling umbrella-sampling molecular-modeling
Language:Python 304
markovmodel / msmtools
Tools for estimating and analyzing Markov state models
markov-state-model analysis markov-model
Language:Python 38
bowman-lab / enspara
Modeling molecular ensembles with scalable data structures and parallel computing
biophysics clustering protein-structure markov-state-model kinetic-modeling molecular-dynamics python molecular-modeling
Language:Python 33
sbhakat / AF-cryptic-pocket
Cryptic pocket prediction using AlphaFold 2
metadynamics molecular-dynamics markov-state-model alphafold2
Language:Jupyter Notebook 21
sonidosmutantes / apicultor
[Deprecated] py2.7 API.Cultor: Another BigData approach to sound collections
music-information-retrieval live-coding computer-music markov-state-model api-rest big-data art machine-learning
Language:Python 19
MasterMSM
BioKT / MasterMSM
Python package for generating Markov state models
markov-state-model molecular-dynamics protein-folding
Language:Python 18
matsunagalab / tutorial_hmm
Hands-on tutorials for Markov state modeling of MD and EXP data
hidden-markov-model markov-state-model
Language:Jupyter Notebook 3
liyigerry / gp120
Data, methods and code for research on the molecular dynamics of HIV glycoprotein gp120
gp120 molecular-dynamics simulation markov-state-model
2
sbhakat / MSM-ring-flipping
Predicting kinetics of aromatic side-chain flipping using Markov State Model
markov-state-model molecular-dynamics side-chain
Language:Jupyter Notebook 1
eguarnera / ChromaSEP
ChromaSEP
3d-reconstruction chromatin markov-state-model
Language:Python
eguarnera / ChromaWalker
ChromaWalker
chromatin markov-state-model metastability
Language:Python
sbhakat / PMV
Scripts used for MSM and post-dynamics analysis of PMV simulations
plasmepsin molecular-dynamics markov-state-model
Language:Jupyter Notebook