Giters
Markov model (markovmodel)

Markov model

markovmodel

Geek Repo

Github PK Tool:Github PK Tool

Markov model's repositories

PyEMMA

🚂 Python API for Emma's Markov Model Algorithms 🚂

Language:PythonLicense:LGPL-3.0Stargazers:304Issues:31Issues:892

deeptime

Deep learning meets molecular dynamics.

Language:Jupyter NotebookLicense:LGPL-3.0Stargazers:172Issues:25Issues:24

pyemma_tutorials

How to analyze molecular dynamics data with PyEMMA

Language:Jupyter NotebookLicense:CC-BY-4.0Stargazers:70Issues:9Issues:104

molPX

IPython API to visualize MD-trajectories along projected trajectories inside a Jupyter notebook

Language:PythonLicense:LGPL-3.0Stargazers:39Issues:11Issues:24

msmtools

Tools for estimating and analyzing Markov state models

Language:PythonLicense:LGPL-3.0Stargazers:39Issues:11Issues:45

mdshare

Get access to our MD data files.

Language:PythonLicense:LGPL-3.0Stargazers:25Issues:3Issues:6

ivampnets

Language:PythonStargazers:24Issues:6Issues:7

pyemma-workshop

Language:Jupyter NotebookLicense:LGPL-3.0Stargazers:23Issues:20Issues:5

adaptivemd

A python framework to run adaptive Markov state model (MSM) simulation on HPC resources

Language:PythonLicense:LGPL-2.1Stargazers:18Issues:9Issues:28

thermotools

Winter is coming...

Language:PythonLicense:LGPL-3.0Stargazers:12Issues:19Issues:17

PyEMMA_IPython

PyEMMA Jupyter Notebooks

Language:Jupyter NotebookStargazers:11Issues:18Issues:4

variational

Basis sets, estimators and solvers for the variational approach of conformation dynamics. NOTE: the code has been merged with PyEMMA and is maintained there.

Language:PythonStargazers:10Issues:19Issues:19

pytram

The pytram package is deprecated and no longer supported. We recommend to switch to PyEMMA

Language:PythonStargazers:9Issues:20Issues:46

graphtime

Encoding of transition probabilities with undirected graphical models

Language:Jupyter NotebookLicense:LGPL-3.0Stargazers:8Issues:5Issues:1

deep_gen_msm

Code for the results of the paper at https://arxiv.org/abs/1805.07601

Language:Jupyter NotebookStargazers:6Issues:5Issues:0

deepmsm

Code to reproduce results for the paper: Progress in deep Markov State Modeling: Coarse graining and experimental data restraints

Language:Jupyter NotebookStargazers:6Issues:8Issues:0

PySFD

Language:PythonLicense:LGPL-3.0Stargazers:5Issues:6Issues:4

compsci-2018

Repository for the computational sciences software project of 2018/2019

Language:Jupyter NotebookStargazers:4Issues:14Issues:3

msmrd2

Language:C++Stargazers:3Issues:17Issues:0

coordinates

Language:PythonStargazers:2Issues:18Issues:15

deep_rev_msm

Language:Jupyter NotebookStargazers:2Issues:8Issues:0

msmrd

MSMs coupled with reaction-diffusion dynamics

Language:Jupyter NotebookStargazers:2Issues:5Issues:0

compsci-2016

Repository for the computational sciences project of 2016/2017

Language:Jupyter NotebookStargazers:1Issues:8Issues:0

decomposed_msms

Language:Jupyter NotebookStargazers:1Issues:8Issues:0

msm-theory-sandbox

A playground for examples and tools to explore the theory of MSMs and related models.

Language:PythonLicense:MITStargazers:1Issues:6Issues:0

basissets

Basis sets for variational approach for conformational dynamics (VAC)

Language:PythonStargazers:0Issues:5Issues:0

compsci-2017

Repository for the computational sciences software project of 2017/2018

Language:Jupyter NotebookStargazers:0Issues:7Issues:0

feature_selection

Variational approach to feature selection

Language:PythonStargazers:0Issues:7Issues:1

mcmm-project

Language:Jupyter NotebookStargazers:0Issues:4Issues:0

oom

Code for observable operator models

Language:PythonStargazers:0Issues:6Issues:0