linkage-mapping

There are 0 repository under linkage-mapping topic.

• LepWrap

  pdimens / LepWrap

  A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.

  linkagelinkage-mappingsnakemakebioinformaticsgenome-assembly
  Language:Perl 9

• Cristianetaniguti / Reads2Map

  A collection of WDL bioinformatic workflows to benchmark markers coming from different pipelines using linkage map quality as a diagnosis.

  genotyping-by-sequencinghaplotypeslinkage-mappingpipelinesvariant-callingwdl
  Language:WDL 7

• alethere / SmoothDescent

  Repository of SmoothDescent R package. Smooth Descent is a map-cleaning algorithm that can calculate identity by descent probabilities and correct genotyping errors based on marker maps.

  ibdgenotypinglinkage-mapping
  Language:R 3

• tomkurowski / vcf2loc

  VCF to JoinMap loc (variant-to-marker) conversion tool

  bioinformaticslinkage-mappingvcfjoinmap
  Language:Python 1

• mschemmel / gmap

  An R package to visualize genetic maps.

  genetic-mapslinkage-mappingrecombination-eventsrpackage
  Language:R 0

• tfording / marmorata_linkagemap

  Marmorata Linkage Map

  linkage-mappingbioinformatics-scripts
  Language:Python 0

• ulrichga / Lfab_QTL

  Analyses of my MSc Thesis: "Genetic architecture of parasitoid counteradaptation to symbiont-conferred resistance"

  biologyqtl-mappinggeneticsevolutionbioinformaticsrbashgenomicslinkage-mapping
  Language:R 0

• CNuge / phase-imputation

  This program leverages zero recombination clusters and their relative positions on a linkage group to impute phases for missing data with high fidelity.

  pythonpandasbioinformaticsphasehaplotypeslinkage-mapping
  Language:Python

• mtekman / linkage-converter

  Converts between linkage output formats {Genehunter, Merlin, Simwalk, Swiftlink} → Allegro

  allegrogenehunterlinkagelinkage-mappingmerlinswiftlink
  Language:Python