genotype-phenotype-maps

There are 0 repository under genotype-phenotype-maps topic.

• harmslab / epistasis

  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.

  genotype-phenotype-mapspythonepistasishigh-ordernonlinearmodelinggeneticsevolution
  Language:Python 33

• harmslab / gpmap

  A Python API for managing genotype-phenotype map data

  evolutiongeneticsgenotype-phenotype-mapsnetworkx
  Language:Python 11

• harmslab / notebooks-nonlinear-high-order-epistasis

  Jupyter notebooks for Genetics paper, "Detecting high-order epistasis in nonlinear genotype-phenotype maps"

  epistasishigh-order-epistasisstatisticsgeneticsjupyter-notebooksgenotype-phenotype-maps
  Language:Jupyter Notebook 6

• devinkeane / sPyderMIM

  Constructs and analyzes genotype/phenotype networks using a list of OMIM phenotypic MIM numbers as input; ranks and clusters disease associated gene sets; runs enrichment analysis on gene sets for mechanism and drug discovery.

  bioinformaticsgenomicsomim-apigenotype-phenotype-mapsnetwork-analysisnetworkxdrug-discoverydrug-repurposingdrugdiscovery
  Language:Python 2
• 1DconvKernels

  divprasad / 1DconvKernels

  👨‍💻🧬🤖 deep neural networks: 1Dconvolution experiments with kernel size and stride length

  convolutional-neural-networksgenotype-phenotype-mapsmicrobial-genomicsantimicrobial-resistance
  Language:Jupyter Notebook 1

• vatj / gpmap_integer_polyomino

  Code repository for the analysis of the Genotype-Phenotype Map Properties of the Integer Polyomino Model.

  polyominogenotype-phenotype-mapsgene-duplication
  Language:C++ 0