enzyme-constraints

There are 0 repository under enzyme-constraints topic.

• SysBioChalmers / DLKcat

  Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

  bayesiandeep-learningenzyme-constraintsenzyme-turnover-numberkcatkinetics
  Language:Python 117

• SysBioChalmers / GECKO

  Toolbox for including enzyme constraints on a genome-scale model.

  data-integrationenzyme-constraintskineticsmatlabproteomicssystems-biologytoolbox
  Language:MATLAB 63

• ginkgobioworks / geckopy

  Enzyme-constrained genome-scale models in python

  data-integrationenzyme-constraintskineticsomicsproteomicssystems-biologythermodynamics
  Language:Python 24

• SysBioChalmers / ecFactory

  A constraint-based method for prediction of metabolic engineering targets using ecModels of metabolism

  cell-factoryenzyme-constraintsmetabolic-modelsmicrobes
  Language:MATLAB 7

• pwendering / PRESTO

  PRESTO: Correction of turnover numbers in enzyme-constraint metabolic models

  enzyme-constraintskcatmetabolic-models
  Language:MATLAB 3

• pwendering / RENZO_paper

  Impose constraints on enzyme abundances ratios in enzyme-constraint metabolic models

  constraint-based-modelingenzyme-constraintsmetabolic-engineeringmetabolic-modelsproteomics
  Language:MATLAB 2

• areias03 / tmCOM

  GitHub repository to support the development of the thesis "Development of microbial community simulation methods to characterize and analyze the effects of metal concentrations on pathogen silencing/promotion".

  bioinformaticsenzyme-constraintsmetabolomicsmodellingmetabolic-modelmicrobial-communities
  Language:Jupyter Notebook 1

• IVANDOMENZAIN / diverseYeasts_metabolism

  enzyme-constraintsgemmetabolismsystems-biology
  Language:MATLAB 1

• SysBioChalmers / EnzymeConstrained_humanModels

  Collection of scripts for enhancing humanGEM based models with kinetic and proteomics constraints and specialized simulation utilities.

  genome-scale-modelsproteomics-data-integrationkineticsenzyme-constraintssystems-biology
  Language:MATLAB 1

• SysBioChalmers / GECKO2_simulations

  Collection of scripts for reproduction of simulation results in "Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0".

  enzyme-constraintsconstraint-based-modelingmetabolism
  Language:MATLAB 1

• SysBioChalmers / KMG060-Systems-Biology-course

  KMG060 Systems Biology course - repo for students

  rna-seq-analysismetabolic-modelsflux-balance-analysissystems-biologyenzyme-constraints
  Language:MATLAB 1

• SysBioChalmers / CellFactory-ecYeastGEM

  Code and data for in silico strain design for enhanced production of +100 typical bio-products with yeast as a cell-factory. Predictions are based on the ecYeastGEM model avaiable at ecModels.

  yeastcell-factoryenzyme-constraintsconstraint-based-modeling
  Language:MATLAB