Tom Stanton's starred repositories
python-fire
Python Fire is a library for automatically generating command line interfaces (CLIs) from absolutely any Python object.
block-aligner
SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.
parasail-python
Python bindings for the parasail C library.
minimap2-rs
Rust bindings to minimap2 library
Scrooge
Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improvements on top of GenASM, and high-performance CPU and GPU implementations. Described by Lindegger et al. at https://doi.org/10.48550/arXiv.2208.09985
deidentifyr
👥 An R package for deidentifying datasets that may contain personally identifiable information (PII)
alignment-chart
Repository for R-driven ali{g}nment char{t}s