Gentner Lab

pyoperant

python package for operant conditioning

ephys-analysis

Scripts and utilities for processing electrophysiology data

demixed-PCA

Python implementation of Brendel, Romo, & Machens' Demixed Principal Component Analysis

sturnus

django database & website for experiment data

klusta-pipeline

data pipeline for analyzing spike2 collected data in klustakwik

behav-analysis

Scripts and utilities for processing behavior data from pyoperant

glab-common-py

common python code for gentnerlab

isotools

command-line tools for calculating cluster quality

gentnerlab.github.io

probe-the-broab

scripts used for experiment control

pyoperant_example_bird

An example bird folder for pyoperant

airflow

Airflow is a system to programmatically author, schedule and monitor data pipelines.

archivetools

Scripts and functions to archive and keep track of data

django-broab

Django package that implements the Python-Neo data model for electrophysiology

glab-common-mat

common scripts for common tasks

glab_oe_rig_tools

Tools for new open ephys electrophysiology rigs

ipydra

Web interface for spawning IPython Notebook servers.

KiloSort

GPU code for spike sorting

klustakwik

Fast software for high-dimensional cluster analysis using the masked EM algorithm for Gaussians mixtures. (Can also be used in "classical" mode for standard hard EM algorithm).

klustaviewa

GUI for spike sorting manual stage in Python

manage_behavior

scripts to manage behavior

operant_c

operant scripts

plugin-GUI

Open Ephys GUI with plugin architecture

PyDAQmx

Interface to National Instrument NIDAQmx driver

pys2talker

core functions and classes for building a Spike2 Talker in Python

rpioperantctl

A simple python script for managing processes on remote RPis in python via ssh. Will likely be replaced with zmq soon.

s2-acute

old recording scripts

scrumlord

Continuous administration of the Greene Lab's electronic scrum

spikedetekt2

ZMQPlugins

Open Ephys GUI plugin for networking using the ZMQ library