Thomas Keller's repositories
epilact_paper
R code methods and materials for EPILACT methylation study
steamspyR
Pull Down and Parse Steam Spy API Data
Topic1_TeamA
Developing automated pipelines for conducting meta-analyses and systematic reviews
myfirst_repo
toy example repo for ironhack/genomics 02/13/19
intro_python_rc
Intro to Python materials for Research Computing
RAnalysisWorkshop2018
Code, slides and information for the 2018 USF Data Analysis Using R Workshop
atacseq-snakemake
My first go at a snakemake pipeline. The biological question is looking at host-response in humans infected with Toxoplasma, so there is a somewhat unusual fastq decontamination step if you aren't used to metagenomics (this isn't metagenomics).
rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
TampaUseRs
a repository for slides, code, and other materials for the Tampa R Users Group
plant-seedling
Location for our group collaborative competition for the Kaggle, https://www.kaggle.com/c/plant-seedlings-classification
rtweet
R client for accessing Twitter [stream and REST] API
rna-seq-snakemake
Snakemake based pipeline for RNA-Seq analysis
thomas-keller.github.io
yet another website v9000
tibble
A modern re-imagining of the data frame
ml_twitter
Classifying twitter texts based on network statistics and other ~stuff~
textnets
R package to perform automated text analysis using network techniques
exosome_markers_per_med_sep_2015
Exosome Markers Poster for Personalized Medicine Conference
nips2016-tweets
R markdown (with interactive shiny apps) twitter analysis of NIPS2016 neural network conference
plos_corpus
parsing the plos corpus dump of fall 2016 (Python + R)
tweet-conf
Some simple R scripts to collect and visualize twitter happenings around a conference hashtag
tweetconfr
simple R library to visualize twitter interactions around a hashtag, such as a conference
tweet-pol
beginnings of twitter mining. Lots of code heavily based on https://github.com/SMAPPNYU/echo_chambers
ultrasound-nerve-segmentation
Deep Learning Tutorial for Kaggle Ultrasound Nerve Segmentation competition, using Keras
docker-stuff
some docker files I've made
tensorflow-nb-scripts
I'm in the early days of learning both tensorflow AND machine-learning, so look away unless you want to see horrible notebooks and code
insta-grab
try to mine instagram if they let me