thomas-keller

Thomas Keller's starred repositories

Team2_GEO

Team-leads: Thomas Keller and Swamy Rakesh

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usfomicshub.github.io

USF Omics Hub official github-repository: your landing-spot for finding our USF Genomics community-resources.

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BioID

Source files for online resources of Bioinformatics of Infectious Diseases course

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Topcuoglu_ML_mBio_2020

Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data

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trump-russia-bot-analysis

A collection of R scripts for analyzing Twitter data related to Russian bot activity during the 2016 election.

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USF_Omics_Hub

Code used by the USF Omics Hub

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Genomic-ULMFiT

ULMFiT for Genomic Sequence Data

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interpretable-ml-book

Book about interpretable machine learning

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miRge

miRge - microRNA alignment software for small RNA-seq data, now at v2.0

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exosome_markers_per_med_sep_2015

Exosome Markers Poster for Personalized Medicine Conference

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rna-seq-snakemake

Snakemake based pipeline for RNA-Seq analysis

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DC-ML-2018

Materials for the Applied Machine Learning Workshop in Washington DC

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dancenet

DanceNet -💃💃Dance generator using Autoencoder, LSTM and Mixture Density Network. (Keras)

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rmd-cv

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ChIP-seq-analysis

ChIP-seq analysis notes from Ming Tang

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chr

🔤 Lightweight R package for manipulating [string] characters

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subsample

Randomly sample lines from a csv, tsv, or other line-based data file

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spykesML

A class for using ML algorithms for spike prediction

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dropSeqPipe

A SingleCell RNASeq pre-processing snakemake workflow

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learnRvideos

📼 Videos for learning about R

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rtweet

🐦 R client for interacting with Twitter's [stream and REST] APIs

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hyperas

Keras + Hyperopt: A very simple wrapper for convenient hyperparameter optimization

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deeplearning-biology

A list of deep learning implementations in biology

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deep-learning-with-python-notebooks

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

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gcn

Implementation of Graph Convolutional Networks in TensorFlow

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ggpy

ggplot port for python

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conlinks

List of links to lists of links to conference slides

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Data-Analysis-and-Machine-Learning-Projects

Repository of teaching materials, code, and data for my data analysis and machine learning projects.

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intubate

<||> Interfaces to Popular R Functions for Data Science Pipelines, and More

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BuddySuite

Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files

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