Jason Stajich Lab at UC Riverside's repositories
REPET-slurm
SLURM-ready bash scripts to run the complete REPET pipeline
C_lusitaniae_popseq
Genomic analyses of Clavispora (Candida) lusitaniae strains
Workshop_Rplotting
Lab R tutorials
BlackYeast_CCFEE_genomes
Genomes from Illumina seq of CCFEE strains
Acarospora_annotation
Acarospora sp. genome project annotation
Afum_EVOL20
Identification of SNPs in EVOL20 strain of A. fumigatus
Afum_hrmA_cluster_evolution
Evolution of hrmA cluster in A. fumigatus
Afum_RNASeq_hrmA
Afumigatus RNASeq on eefA strains
AGF_Comparative
AGF chytrid comparative project
AntarcticFungi_Duplication
Test for WGD and ploidy variation in Black Fungi from Antarctica
attack_ATAC
ATAC seq analyis
BdHp_RNASeq
RNASeq analysis of Bd and Hp strains
Chytrid_Rg_JEL800
Analysis of Rg JEL800 genome
Clus_popgenome
Compare Candida lusitaniae population
Coccidioides_immitis_211
Coccidioides assembly and annotation
Coccidioides_PopGenomics_2019
PopGenomics of public Coccidioides data
coding
Tips and tools for bioinformatics coding
coding_challenge
coding challenge
Coelomomyces_genomics
Coelomomyces punctatus genome
coprinopsis_PNAS_2010
Coprinopsis genome paper 2010
Cyanobacteria_pigments
Cyanobacteria Pigment analyses
DCH_Zygo_Scripts
Two simple scripts to add fungal genome from which the bacterial contigs were extracted for further examination with Kaiju
DesertFungi_Genomes
Desert Microbes
EDF_ncRNA_search
Search for ncRNA
GCI
gene conservation index
Hortaea_werneckii_ExpEvol_v2
Hortaea werneckii Experimental evolution project
OrchidFungi_Annotation
Assembly and Annotation of Orchid associated fungi
SPB_Centriole_Flagella
Analyses of proteins defined as Centriole, Flagellum, or Spindle-pole body from literature