stajichlab / Afum_EVOL20

Identification of SNPs in EVOL20 strain of A. fumigatus

Data analysis pipeline for A. fumigatus experimental evolved strain variant identification.

EVOL20 strain first described in Kowalski et al 2016 PMID: 27651366. Data in this seqeuncing project associated with BioProject PRJNA417720

Versions of software:

GATK (v3.6-0-g89b7209)
Picard Tools (v2.6.0)
BWA (v0.7.12)
VCFTools (v0.1.13)
BEDTools (v2.26.0)

Identification of SNPs in EVOL20 strain of A. fumigatus

MIT License

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