Tamas Spisak's repositories
BWAS_comment
Project repository of the Matters Arising commentary "Multivariate BWAS can be replicable with moderate sample sizes in some cases""
FakeSite
MkDocs-based collection of jazz standard notations
rl_lecture
Short Lecture on Reinforcement Learning: model-free vs. model-based
seaborn
Statistical data visualization in Python
bids-website
Website for the Brain Imaging Data Structure standard.
RPN-signature
The Resting-state Pain susceptibility Network signature.
neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
bids-specification
Brain Imaging Data Structure (BIDS) Specification
Dataset-Bias
Detect and correct bias in neuroimaging
magpie
Magpie contains a number of scripts for running Big Data software in HPC environments, including Hadoop and Spark. There is support for Lustre, Slurm, Moab, Torque. LSF, and more.
cluster-utils
Collection of utilities / helper scripts to make life easier on our HPC clusters.
CV_moderncv
My latex CV with the 'moderncv' package
CV_twentysecondcv
My latex CV with the twentysecondcv package
gradientplot
Plot fMRI activation patterns in gradient space
benchmark_rsfMRI_prediction
Minimal scripts available for predictions on multiple datasets
fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
Neuroimaging_Pattern_Masks
Brain signature patterns, atlases of regions, and meta-analysis masks for neuroimaging data analysis.
example
This an example app that can serve as a template.
badges
:pencil: Markdown code for lots of small badges :ribbon: :pushpin: (shields.io, forthebadge.com etc) :sunglasses:. Contributions are welcome! Please add yourse!
C-PAC
Configurable Pipeline for the Analysis of Connectomes
docker-shields
Shields.io in a Docker image :whale:
PlaceboImagingMetaAnalysis
Analyses for "The effect of experimental placebo interventions on cerebral pain signature activity – a meta-analysis" by the placebo imaging collaboration. Requires MATLAB (2016b+SPM12+CANlab toolbox), R(for linear mixed models, only), MRIcroGL (PASCAL-based program for plotting/rendering images). Start at A_Run_All_Analyses.m.